Appendix A

Data sets

Example 1.2.1

data ex121;
input animal $ dose $ PCVl PCV2 PCVdif;
cards;

1	L	17.4	19.3	1.9
2	L	18.7	18.9	0.2
3	L	15.8	19.2	3.4
4	L	16.4	19.9	3.6
5	L	16.6	17.8	1.1
1	M	16.8	22.6	5.9
2	M	17.3	19.7	2.4
3	M	17.5	20.2	2.7
4	M	15.2	19.5	4.3
1	H	18.0	25.7	7.7
2	H	16.8	25.1	8.3
3	H	18.3	25.2	6.9
4	H	17.8	22.8	5.0
5	H	15.8	26.1	10.2

Example 1.2.2

data ex122;
input herd $ dose $ PCVdif;
cards;

1	L	0.9
1	L	2.0
1	L	2.0
1	L	2.2
1	L	2.0
1	H	7.4
1	H	6.8
1	H	7.1
1	H	6.7
1	H	7.9
2	L	2.3
2	L	2.7
2	L	1.3
2	L	1.6
2	L	2.1
2	H	6.6
2	H	7.1
2	H	6.2
2	H	7.8
2	H	7.2
3	L	3.4
3	L	2.7
3	L	2.8
3	L	3.0
3	L	3.4
3	H	8.8
3	H	8.3
3	H	7.9
3	H	8.2
3	H	8.1

Example 1.2.3

data ex123;
input herd $ drug $ PCVdif;
cards;

1	Berenil	7.1
1	Berenil	6.6
1	Berenil	5.8
1	Berenil	6.3
1	Berenil	6.4
1	Berenil	7.0
1	Berenil	7.3
2	Berenil	6.9
2	Berenil	6.3
2	Berenil	7.6
2	Berenil	7.7
2	Berenil	7.6
2	Berenil	7.1
2	Berenil	7.5
3	Samorin	6.8
3	Samorin	6.9
3	Samorin	7.6
3	Samorin	7.9
3	Samorin	7.5
3	Samorin	6.8
3	Samorin	7.0
4	Samorin	8.0
4	Samorin	8.1
4	Samorin	7.1
4	Samorin	6.9
4	Samorin	8.2
4	Samorin	7.7
4	Samorin	7.6

Example 1.2.4

data ex124;
input herd $ drug $ dose $ PCVdif;
cards;

1	Berenil	L	2.5
1	Berenil	L	1.6
1	Berenil	L	3.5
1	Berenil	L	2.6
1	Berenil	L	2.8
1	Berenil	H	6.9
1	Berenil	H	6.8
1	Berenil	H	7.2
1	Berenil	H	5.9
1	Berenil	H	6.5
2	Berenil	L	3.6
2	Berenil	L	3.0
2	Berenil	L	4.0
2	Berenil	L	3.3
2	Berenil	L	3.5
2	Berenil	H	6.3
2	Berenil	H	7.7
2	Berenil	H	7.3
2	Berenil	H	8.3
2	Berenil	H	7.8
3	Samorin	L	2.9
3	Samorin	L	2.5
3	Samorin	L	2.3
3	Samorin	L	2.8
3	Samorin	L	2.7
3	Samorin	H	7.0
3	Samorin	H	6.7
3	Samorin	H	7.6
3	Samorin	H	6.8
3	Samorin	H	7.2
4	Samorin	L	4.6
4	Samorin	L	3.5
4	Samorin	L	4.1
4	Samorin	L	3.9
4	Samorin	L	4.0
4	Samorin	H	7.7
4	Samorin	H	8.6
4	Samorin	H	8.1
4	Samorin	H	7.7
4	Samorin	H	8.7

Example 1.2.5

data ex125;
input region $ drug $ dose $ PCV;
cards;

1	BERENIL	H	22.6
1	BERENIL	L	21.8
1	SAMORIN	H	19.1
1	SAMORIN	L	16.4
2	BERENIL	H	29.0
2	BERENIL	L	28.8
2	SAMORIN	H	25.3
2	SAMORIN	L	18.2
3	BERENIL	H	24.0
3	BERENIL	L	23.7
3	SAMORIN	H	19.5
3	SAMORIN	L	16.0
4	BERENIL	H	27.7
4	BERENIL	L	26.3
4	SAMORIN	H	21.9
4	SAMORIN	L	16.6
5	BERENIL	H	28.3
5	BERENIL	L	23.3
5	SAMORIN	H	25.2
5	SAMORIN	L	19.3
6	BERENIL	H	21.1
6	BERENIL	L	21.8
6	SAMORIN	H	17.9
6	SAMORIN	L	16.3

Example 1.2.6

data ex126 (drop=animal1 animal2 animal3 animal4);
input time replicat $ animall anima12 animal3 animal4;
anim_d=1; OD=animall;output;
anim_d=2; OD=animal2;output;
anim_d=3; OD=animal3;output;
anim_d=4; OD=animal4;output;
cards;

1	1	0.910	0.806	0.675	0.639
1	2	0.923	0.807	0.685	0.639
2	1	0.929	0.743	0.682	0.581
2	2	0.907	0.746	0.686	0.584
3	1	0.924	0.802	0.708	0.560
3	2	0.918	0.803	0.703	0.564
4	1	0.929	0.820	0.649	0.572
4	2	0.927	0.828	0.631	0.582
5	1	0.876	0.819	0.696	0.619
5	2	0.875	0.825	0.684	0.640
6	1	0.911	0.752	0.709	0.600
6	2	0.914	0.760	0.704	0.603
7	1	0.919	0.753	0.668	0.604
7	2	0.937	0.750	0.659	0.587
8	1	0.906	0.738	0.684	0.602
8	2	0.906	0.754	0.688	0.605
9	1	0.952	0.817	0.690	0.544
9	2	0.954	0.803	0.690	0.565
10	1	0.975	0.808	0.731	0.628
10	2	0.961	0.802	0.716	0.613
11	1	0.923	0.789	0.711	0.618
11	2	0.930	0.793	0.705	0.618

Example 1.2.7

data ex127;
input sire $ ww;
cards;

1	11.1
1	10.8
1	11.3
2	15.9
2	13.0
2	12.6
2	14.6
2	13.6
2	12.5
2	15.7
2	12.9
2	14.6
3	11.8
3	10.8
3	12.4
4	17.6
4	20.2
4	19.1
4	14.3
4	15.8
4	18.8
5	17.8
5	13.3
5	12.6
5	16.3
5	13.5
5	12.7
5	18.5
6	14.6
6	10.7
6	10.6
6	15.8
6	13.0
7	13.4
7	17.0
7	18.3
7	13.9
8	13.6
8	12.1
8	15.6
8	12.8
8	13.0
8	12.9

Example 3.1

The data set is only shown partially. For each herd a few observations are shown. In the case of Berenil treated herds, a few animals with low dose and a few animals with high dose are shown. Note that the herd is nested in drug, so that if the herds have the same number, but are treated with a different drug, they are actually different herds.

data ex 31;
input herd $ anim_id $ PCV1 PCV2 dose $ drug $;
cards;

1	667	17	28	1	BERENIL
1	1003	22	23	1	BERENIL
1	1177	20	28	1	BERENIL
1	227	22	25	2	BERENIL
1	241	22	23	2	BERENIL
1	271	18	18	2	BERENIL
1	44	22	27	1	SAMORIN
1	48	21	20	1	SAMORIN
1	233	18	30	1	SAMORIN
2	1368	18	20	1	BERENIL
2	1371	22	22	1	BERENIL
2	1594	20	18	1	BERENIL
2	96	22	24	2	BERENIL
2	108	13	25	2	BERENIL
2	821	18	22	2	BERENIL
2	196	22	28	1	SAMORIN
2	726	21	17	1	SAMORIN
2	745	22	25	1	SAMORIN
3	78	21	20	1	BERENIL
3	734	22	25	1	BERENIL
3	739	22	24	1	BERENIL
3	53	20	27	2	BERENIL
3	799	22	26	2	BERENIL
3	829	18	24	2	BERENIL
3	333	20	25	1	SAMORIN
3	390	18	25	1	SAMORIN
3	395	20	22	1	SAMORIN
4.	319	21	22	1	BERENIL
4	341	22	23	1	BERENIL
4	379	20	25	1	BERENIL
4	302	18	23	2	BERENIL
4	314	22	30	2	BERENIL
4	562	20	31	2	BERENIL
4	1174	20	27	2	BERENIL
4	1214	19	30	2	BERENIL
4.	656	20	22	1	SAMORIN
4	842	22	24	1	SAMORIN
4	848	20	25	1	SAMORIN

Example 3.2

The data set is only shown partially. For each breed, the observations on the complete offspring of a few sires are shown.

data ex 32;
input breed $ sire-id $ sex $ agew ww;
cards;

1	1971	F	145	11.2
1	1971	F	140	15.4
1	1971	F	140	10.9
1	1971	M	122	11.4
1	1972	F	152	16.0
1	1972	M	151	13.2
1	1972	F	146	14.9
1	1972	F	139	7.9
1	1972	M	132	15.7
1	1972	F	131	13.1
1	1972	F	128	12.5
1	1972	M	124	12.2
1	1972	M	122	14.6
1	1972	F	115	13.6
1	1972	M	110	12.6
2	1975	F	147	11.2
2	1975	M	145	12.8
2	1975	M	136	12.5
2	1975	M	134	12.4
2	1975	M	133	16.6
2	1975	F	126	8.9
2	1976	M	154	15.5
2	1976	F	147	9.5
2	1976	F	142	15.3
2	1976	M	139	16.2
2	1876	F	123	11.7
3	1971	M	160	14.5
3	1971	F	159	12.1
3	1971	M	154	13.9
3	1971	F	151	10.5
3	1971	F	148	11.7
3	1971	F	148	12.6
3	1971	M	147	8.7
3	1971	F	144	6.5
3	1971	M	139	17.2
4.	1975	F	153	14.4
4	1975	F	153	15.9
4	1973	M	151	12.4
4	1975	M	142	16.4
4	1975	M	142	14.1
4	1975	M	141	14.8
4	1976	F	141	15.0
4	1975	M	128	11.9
4	1975	M	127	12.8
4	1975	F	126	14.9
4	1975	F	125	9.0
4	1975	M	121	13.5
4	1975	M	114	5.9
5	1975	M	120	11.3
5	1975	M	118	10.1
5	1975	M	114	6.6
5	1975	F	113	6.9
5	1975	F	99	7.3
5	1975	M	97	5.3
5	1979	F	119	5.3
5	1979	M	117	10.3
5	1979	M	114	8.7
5	1979	F	111	8.1
5	1979	M	102	9.4
6	1972	M	101	4.7
6	1991	F	121	8.9
6	4908	F	166	11.5
6	4908	F	156	11.0
6	4910	F	125	10.2
6	4910	M	98	10.1

Example 3.3

data ex 33;
input anim_d $ breed $ time PCV;
cards;

BO1	BO	0	36.2
BO1	BO	2	35.9
BO1	BO	4	35.3
BO1	BO	7	35.4
BO1	BO	9	35.4
BO1	BO	14	31.5
BO1	BO	17	25.5
BO1	BO	18	34.4
BO1	BO	21	34.1
BO1	BO	23	25.8
BO1	BO	25	28.7
BO1	BO	29	21.6
BO1	BO	31	21.3
BO1	BO	35	17.8
BO209	BO	0	35.9
BO209	BO	2	38.5
BO209	BO	4	35.9
BO209	BO	7	36.0
BO209	BO	9	36.3
BO209	BO	14	36.3
BO209	BO	17	25.2
BO209	BO	18	31.5
BO209	BO	21	30.6
BO209	BO	23	28.7
BO209	BO	25	29.0
BO209	BO	29	23.9
BO209	BO	31	21.3
B0209	BO	35	18.1
BO241	BO	0	29.5
BO241	BO	2	33.3
BO241	BO	4	29.2
BO241	BO	7	29.9
BO241	BO	9	29.0
BO241	BO	14	29.9
BO241	BO	17	21.3
BO241	BO	18	27.4
BO241	BO	21	25.5
BO241	BO	23	25.5
BO241	BO	25	24.8
BO241	BO	29	23.6
BO241	BO	31	22.6
BO241	BO	35	20.4
BO322	BO	0	28.5
BO322	BO	2	27.6
BO322	BO	4	27.9
BO322	BO	7	27.7
BO322	BO	9	29.3
BO322	BO	14	26.7
BO322	BO	17	21.3
BO322	BO	18	26.7
BO322	BO	21	25.2
BO322	BO	23	23.6
BO322	BO	23	23.6
BO322	BO	29	20.0
BO322	BO	31	19.4
BO322	BO	35	17.2
BO328	BO	0	30.4
BO326	BO	2	29.5
BO326	BO	4	28.8
BO326	BO	7	28.7
BO326	BO	9	28.7
BO328	HO	14	27.1
BO326	BO	17	20.7
BO326	BO	18	25.2
BO326	BO	21	22.9
BO326	BO	23	23.2
BO326	BO	25	22.9
BO326	BO	29	20.7
BO326	BO	31	19.1
BO326	BO	35	18.5
BO37	BO	0	33.7
BO37	BO	2	36.2
BO37	BO	4	33.3
BO37	BO	7	32.2
BO37	BO	9	30.9
BO37	BO	14	29.6
BO37	BO	17	22.6
BO37	BO	18	30.3
BO3T	HO	21	28.3
BO37	BO	23	25.8
BO37	BO	25	24.5
BO37	BO	29	21.6
BO37	BO	31	17.5
BO37	BO	35	15.9
ND60	ND	0	30.4
ND60	ND	2	33.0
ND60	ND	4	33.3
ND60	ND	7	31.9
ND60	ND	9	30.6
ND60	ND	14	31.2
ND60	ND	17	27.7
ND60	ND	18	28.0
ND60	ND	21	28.3
ND60	ND	23	27.7
ND60	ND	25	25.8
ND60	ND	29	26.1
ND60	ND	31	24.5
ND60	ND	35	22.6
ND66	ND	0	37.5
ND66	ND	2	37.8
ND66	ND	4	36.5
ND66	ND	7	35.7
ND66	ND	9	35.7
ND66	ND	14	33.8
ND66	ND	17	33.4
ND66	ND	18	31.5
ND66	ND	21	32.5
ND66	ND	23	34.7
ND66	ND	26	30.6
ND66	ND	29	31.5
ND66	ND	31	25.2
ND66	ND	35	28.7
ND72	ND	0	32.4
ND72	ND	2	30.4
ND72	ND	4	31.7
ND72	ND	7	31.2
ND72	ND	9	31.5
ND72	ND	14	27.7
ND72	ND	17	27.1
ND72	ND	18	27.4
ND72	ND	21	29.0
ND72	ND	23	28
ND72	ND	25	27.4
ND72	ND	29	28.3
ND72	ND	31	26.1
ND72	ND	35	22.9
ND73	ND	0	34.3
ND73	ND	2	33.0
ND73	ND	4	37.5
ND73	ND	7	36.3
ND73	ND	9	34.1
ND73	ND	14	30.6
ND73	ND	17	27.7
ND73	ND	18	29.9
ND73	ND	21	28.0
ND73	ND	23	27.1
ND73	ND	25	26.7
ND73	ND	29	28.7
ND73	ND	31	23.9
ND73	ND	35	22.6
ND74	ND	0	30.4
ND74	ND	2	32.1
ND74	ND	4	32.1
ND74	ND	7	30.9
ND74	ND	9	30.6
ND74	ND	14	29.6
ND74	ND	17	23.6
ND74	ND	18	29.0
ND74	ND	21	29.6
ND74	ND	23	28.7
ND74	ND	25	27.1
NDT4	ND	29	25.8
ND74	ND	31	26.1
ND74	ND	35	24.2
ND75	ND	0	40.4
ND75	ND	2	37.5
ND75	ND	4	38.8
ND75	ND	7	37.0
ND75	ND	9	38.9
ND75	ND	14	31.9
ND75	ND	17	27.1
ND75	ND	18	31.5
ND75	ND	21	31.2
ND75	ND	23	33.1
ND75	ND	25	35.4
ND75	ND	29	30.6
ND75	ND	31	28.7
ND75	ND	35	26.1

1	L	0.9
1	L	2.0
1	L	2.0
1	L	2.2
1	L	2.0
1	H	7.4
1	H	6.8
1	H	7.1
1	H	6.7
1	H	7.9
2	L	2.3
2	L	2.7
2	L	1.3
2	L	1.6
2	L	2.1
2	H	6.6
2	H	7.1
2	H	6.2
2	H	7.8
2	H	7.2
3	L	3.4
3	L	2.7
3	L	2.8
3	L	3.0
3	L	3.4
3	H	8.8
3	H	8.3
3	H	7.9
3	H	8.2
3	H	8.1

1	L	0.9
1	L	2.0
1	L	2.0
1	L	2.2
1	L	2.0
1	H	7.4
1	H	6.8
1	H	7.1
1	H	6.7
1	H	7.9
2	L	2.3
2	L	2.7
2	L	1.3
2	L	1.6
2	L	2.1
2	H	6.6
2	H	7.1
2	H	6.2
2	H	7.8
2	H	7.2
3	L	3.4
3	L	2.7
3	L	2.8
3	L	3.0
3	L	3.4
3	H	8.8
3	H	8.3
3	H	7.9
3	H	8.2
3	H	8.1

1	L	0.9
1	L	2.0
1	L	2.0
1	L	2.2
1	L	2.0
1	H	7.4
1	H	6.8
1	H	7.1
1	H	6.7
1	H	7.9
2	L	2.3
2	L	2.7
2	L	1.3
2	L	1.6
2	L	2.1
2	H	6.6
2	H	7.1
2	H	6.2
2	H	7.8
2	H	7.2
3	L	3.4
3	L	2.7
3	L	2.8
3	L	3.0
3	L	3.4
3	H	8.8
3	H	8.3
3	H	7.9
3	H	8.2
3	H	8.1